CellRanger Processor Skill
SkillDev toolsCell Ranger skill for 10X Genomics single-cell data processing
Use CellRanger Processor Skill in Claude, ChatGPT or Ahel Desktop
Free. Sign in, add CellRanger Processor Skill and connect your AI. About a minute.
Also: Claude Code · Cursor · Codex
Then ask your AI: use the CellRanger Processor Skill
Details
Instructions available. Your AI can read the instructions. Execution depends on the setup they require.
Account requirements not reviewed. Check the skill instructions before use; Ahel provides instructions and does not run this skill.
No other account needed.
Add Ahel to your AI once: Claude, ChatGPT, Cursor, Claude Code or Codex. Then ask it to use this.
What this skill tells your AI
The instructions your AI receives, as published by a5c-ai/babysitter in library/specializations/domains/science/bioinformatics/skills/cellranger-processor/SKILL.md and read by Ahel’s review.
Purpose
Provide Cell Ranger capabilities for 10X Genomics single-cell data processing including demultiplexing and alignment.
Capabilities
- BCL to FASTQ conversion
- Cell barcode demultiplexing
- UMI counting
- Feature barcode processing
- Aggregate sample analysis
- Loupe Browser file generation
Usage Guidelines
- Configure sample sheets accurately
- Validate cell counts against expectations
- Review QC metrics from web summary
- Aggregate samples for combined analysis
- Generate Loupe files for visualization
- Document reference versions
Dependencies
- Cell Ranger
- STARsolo
Process Integration
- Single-Cell RNA-seq Analysis (scrnaseq-analysis)
- Spatial Transcriptomics Analysis (spatial-transcriptomics)
Signals
- GitHub stars
- 2k
- Forks
- 113
- Last commit
- Sep 2026
Advanced
- Item type
- skill
- Key
cellranger-processor- Source
- github.com/a5c-ai/babysitter