MaxQuant Processor Skill
SkillDev toolsMaxQuant mass spectrometry skill for protein identification and quantification
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Details
Instructions available. Your AI can read the instructions. Execution depends on the setup they require.
Account requirements not reviewed. Check the skill instructions before use; Ahel provides instructions and does not run this skill.
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Add Ahel to your AI once: Claude, ChatGPT, Cursor, Claude Code or Codex. Then ask it to use this.
What this skill tells your AI
The instructions your AI receives, as published by a5c-ai/babysitter in library/specializations/domains/science/bioinformatics/skills/maxquant-processor/SKILL.md and read by Ahel’s review.
Purpose
Provide MaxQuant mass spectrometry analysis for protein identification and quantification.
Capabilities
- Andromeda search engine execution
- Label-free quantification (LFQ)
- TMT/iTRAQ labeled quantification
- Match between runs
- FDR control and filtering
- PTM site localization
Usage Guidelines
- Configure search parameters for experiment type
- Select appropriate quantification method
- Enable match between runs for improved quantification
- Apply FDR filtering at protein and peptide level
- Localize PTM sites accurately
- Document database and parameter versions
Dependencies
- MaxQuant
- MSFragger
- Proteome Discoverer
Process Integration
- Mass Spectrometry Proteomics Pipeline (ms-proteomics-pipeline)
- Multi-Omics Data Integration (multi-omics-integration)
Signals
- GitHub stars
- 2k
- Forks
- 113
- Last commit
- Sep 2026
Advanced
- Item type
- skill
- Key
maxquant-processor- Source
- github.com/a5c-ai/babysitter