QIIME2 Microbiome Analyzer Skill

SkillDev tools

QIIME2 microbiome analysis skill for 16S rRNA profiling and diversity analysis

Use QIIME2 Microbiome Analyzer Skill in Claude, ChatGPT or Ahel Desktop

Free. Sign in, add QIIME2 Microbiome Analyzer Skill and connect your AI. About a minute.

Claude ChatGPT Ahel Desktop

Also: Claude Code · Cursor · Codex

Then ask your AI: use the QIIME2 Microbiome Analyzer Skill

Details

Instructions available. Your AI can read the instructions. Execution depends on the setup they require.

Account requirements not reviewed. Check the skill instructions before use; Ahel provides instructions and does not run this skill.

No other account needed.

Add Ahel to your AI once: Claude, ChatGPT, Cursor, Claude Code or Codex. Then ask it to use this.

QIIME2 Microbiome Analyzer SkillStart free

What this skill tells your AI

The instructions your AI receives, as published by a5c-ai/babysitter in library/specializations/domains/science/bioinformatics/skills/qiime2-microbiome-analyzer/SKILL.md and read by Ahel’s review.

Purpose

Enable QIIME2 microbiome analysis for 16S rRNA profiling and diversity analysis.

Capabilities

Demultiplexing and denoising (DADA2)
Taxonomic classification
Alpha diversity metrics
Beta diversity analysis
Differential abundance testing
Phylogenetic analysis

Usage Guidelines

Use DADA2 for denoising amplicon data
Select appropriate taxonomic classifier
Calculate diversity metrics with rarefaction
Visualize beta diversity with ordination
Test differential abundance appropriately
Document pipeline parameters

Dependencies

QIIME2
DADA2
phyloseq

Process Integration

16S rRNA Microbiome Analysis (16s-microbiome-analysis)

Signals

GitHub stars: 2k
Forks: 113
Last commit: Sep 2026

Advanced

Item type: skill
Key: qiime2-microbiome-analyzer
Source: github.com/a5c-ai/babysitter

github.com/a5c-ai/babysitter