Files & storage skills.
4,880 files & storage skills, including media-use, research and to-tickets, are listed on ahel today. Each one has a page of its own that says what it does and whether ahel can serve it in Claude, Claude Code, ChatGPT, Codex and Cursor.
Category: Files & storage
4,880 results · page 27 of 163
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bio-atac-seq-atac-peak-callingSkillFiles & storage
Lets your agent identify open chromatin regions from ATAC-seq data using MACS3 with tuned parameters.
Ready to connect★ 3k
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bio-batch-processingSkillFiles & storage
Lets your agent batch process many DNA/protein sequence files: merge, split, convert, and summarize them with Biopython.
Ready to connect★ 3k
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bio-chipseq-peak-callingSkillFiles & storage
Lets your agent call peaks from ChIP-seq data using MACS3 for transcription factors or histone marks.
Ready to connect★ 3k
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bio-compressed-filesSkillFiles & storage
Lets your agent read and write compressed bio sequence files like .gz and .bz2 using Biopython.
Ready to connect★ 3k
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bio-flow-cytometry-fcs-handlingSkillFiles & storage
Lets your agent read and explore flow cytometry FCS files, inspecting data and parameters before analysis.
Ready to connect★ 3k
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bio-format-conversionSkillFiles & storage
Lets your agent convert DNA/protein sequence files between formats like FASTA, FASTQ, GenBank, and EMBL.
Ready to connect★ 3k
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bio-genome-intervals-bed-file-basicsSkillFiles & storage
The largest open-source medical AI skills library for OpenClaw🦞.
Ready to connect★ 3k
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bio-hi-c-analysis-hic-data-ioSkillFiles & storage
Load, convert, and manipulate Hi-C contact matrices using cooler format. Read .cool/.mcool files, convert from .hic format, access matrix data, and export to different formats. Use when loading or converting Hi-C contact matrices.
Ready to connect★ 3k
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bio-imaging-mass-cytometry-data-preprocessingSkillFiles & storage
Load and preprocess imaging mass cytometry (IMC) and MIBI data. Covers MCD/TIFF handling, hot pixel removal, and image normalization. Use when starting IMC analysis from raw MCD files or preparing images for segmentation.
Ready to connect★ 3k
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bio-metabolomics-msdial-preprocessingSkillFiles & storage
MS-DIAL-based metabolomics preprocessing as alternative to XCMS. Covers peak detection, alignment, annotation, and export for downstream analysis. Use when processing MS-DIAL output files for R/Python analysis or when preferring GUI-based preprocessing.
Ready to connect★ 3k
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bio-methylation-bismark-alignmentSkillFiles & storage
Bisulfite sequencing read alignment using Bismark with bowtie2/hisat2. Handles genome preparation and produces BAM files with methylation information. Use when aligning WGBS, RRBS, or other bisulfite-converted sequencing reads to a reference genome.
Ready to connect★ 3k
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bio-methylation-callingSkillFiles & storage
Extract methylation calls from Bismark BAM files using bismark_methylation_extractor. Generates per-cytosine reports for CpG, CHG, and CHH contexts. Use when extracting methylation levels from aligned bisulfite sequencing data for downstream analysis.
Ready to connect★ 3k
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bio-methylation-methylkitSkillFiles & storage
DNA methylation analysis with methylKit in R. Import Bismark coverage files, filter by coverage, normalize samples, and perform statistical comparisons. Use when analyzing single-base methylation patterns, comparing samples, or preparing data for DMR detection.
Ready to connect★ 3k
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bio-microbiome-amplicon-processingSkillFiles & storage
Amplicon sequence variant (ASV) inference from 16S rRNA or ITS amplicon sequencing using DADA2. Covers quality filtering, error learning, denoising, and chimera removal. Use when processing demultiplexed amplicon FASTQ files to generate an ASV table for downstream analysis.
Ready to connect★ 3k
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bio-molecular-ioSkillFiles & storage
Lets your agent read, write, and convert chemistry files like SMILES, SDF, MOL2, and PDB.
Ready to connect★ 3k
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bio-orchestratorSkillFiles & storage
Meta-agent that routes bioinformatics requests to specialised sub-skills. Handles file type detection, analysis planning, report generation, and reproducibility export.
Ready to connect★ 3k
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bio-paired-end-fastqSkillFiles & storage
Handle paired-end FASTQ files (R1/R2) using Biopython. Use when working with Illumina paired reads, synchronizing pairs, interleaving/deinterleaving, or filtering paired data.
Ready to connect★ 3k
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bio-pdb-structure-ioSkillFiles & storage
Parse and write protein structure files using Biopython Bio.PDB. Use when reading PDB, mmCIF, and MMTF files, downloading structures from RCSB PDB, or writing structures to various formats.
Ready to connect★ 3k
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bio-pdb-structure-navigationSkillFiles & storage
Navigate protein structure hierarchy using Biopython Bio.PDB SMCRA model. Use when accessing models, chains, residues, and atoms, iterating over structure levels, or extracting sequences from PDB files.
Ready to connect★ 3k
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bio-read-qc-adapter-trimmingSkillFiles & storage
Remove sequencing adapters from FASTQ files using Cutadapt and Trimmomatic. Supports single-end and paired-end reads, Illumina TruSeq, Nextera, and custom adapter sequences. Use when FastQC shows adapter contamination or before alignment of short reads.
Ready to connect★ 3k
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bio-read-qc-quality-reportsSkillFiles & storage
Generate and interpret quality reports from FASTQ files using FastQC and MultiQC. Assess per-base quality, adapter content, GC bias, duplication levels, and overrepresented sequences. Use when performing initial QC on raw sequencing data or validating preprocessing results.
Ready to connect★ 3k
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bio-read-sequencesSkillFiles & storage
Read biological sequence files (FASTA, FASTQ, GenBank, EMBL, ABI, SFF) using Biopython Bio.SeqIO. Use when parsing sequence files, iterating multi-sequence files, random access to large files, or high-performance parsing.
Ready to connect★ 3k
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bio-single-cell-data-ioSkillFiles & storage
Read, write, and create single-cell data objects using Seurat (R) and Scanpy (Python). Use for loading 10X Genomics data, importing/exporting h5ad and RDS files, creating Seurat objects and AnnData objects, and converting between formats. Use when loading, saving, or converting single-cell data form
Ready to connect★ 3k
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bio-splicing-quantificationSkillFiles & storage
Lets your agent measure alternative splicing levels (PSI) from RNA-seq data using several analysis methods.
Ready to connect★ 3k
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bio-variant-callingSkillFiles & storage
Call SNPs and indels from aligned reads using bcftools mpileup and call. Use when detecting variants from BAM files or generating VCF from alignments.
Ready to connect★ 3k
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bio-vcf-basicsSkillFiles & storage
View, query, and understand VCF/BCF variant files using bcftools and cyvcf2. Use when inspecting variants, extracting specific fields, or understanding VCF format structure.
Ready to connect★ 3k
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bio-vcf-manipulationSkillFiles & storage
Merge, concatenate, sort, intersect, and subset VCF files using bcftools. Use when combining variant files, comparing call sets, or restructuring VCF data.
Ready to connect★ 3k
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bio-virtual-screeningSkillFiles & storage
Lets your agent test candidate drug molecules against a protein structure to predict how well they bind.
Ready to connect★ 3k
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bio-write-sequencesSkillFiles & storage
Write biological sequences to files (FASTA, FASTQ, GenBank, EMBL) using Biopython Bio.SeqIO. Use when saving sequences, creating new sequence files, or outputting modified records.
Ready to connect★ 3k
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instrument-data-to-allotropeSkillFiles & storage
Convert laboratory instrument output files (PDF, CSV, Excel, TXT) to Allotrope Simple Model (ASM) JSON format or flattened 2D CSV. Use this skill when scientists need to standardize instrument data for LIMS systems, data lakes, or downstream analysis. Supports auto-detection of instrument types. Out
Ready to connect★ 3k
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